Isolation, characterization, and evaluation of the phosphate-solubilizing capacity of rhizospheric bacteria associated with Pterocarpus indicus

Authors

DOI:

https://doi.org/10.55779/nsb17412758

Keywords:

phosphate solubilizing bacteria, phosphate solubilizing index, Pterocarpus indicus, rhizosphere, soil moisture

Abstract

Phosphorus (P) deficiency remains a critical factor limiting crop productivity, particularly in tropical soils where most phosphorus occurs in insoluble complexes with iron (Fe³⁺) and calcium (Ca²⁺) ions. This study aimed to isolate, characterize, and evaluate the phosphate-solubilizing capacity of rhizospheric bacteria associated with Pterocarpus indicus. Soil samples were analyzed for moisture content, bacterial abundance, and phosphate-solubilizing bacteria (PSB) diversity, followed by the isolation of PSB on selective media. Each isolate was characterized morphologically and microscopically, and its phosphate-solubilizing ability was quantified using the solubilization index (SI) on Pikovskaya agar. The results showed that soil moisture strongly influenced bacterial abundance, with the highest PSB populations recorded in samples A1 (41 ± 2.16 × 10⁵ CFU g⁻¹ at 65.84% moisture) and A3 (41 ± 2.83 × 10⁵ CFU g⁻¹ at 58.74%). In contrast, the lowest population was observed in sample A2 (15 × 10⁵ CFU g⁻¹ at 46.84%), confirming that moderate soil moisture (58–65%) supports optimal PSB growth. Ten distinct PSB isolates (PSB-L1 to PSB-L10) were successfully purified and exhibited wide phenotypic diversity, including bacillus- and coccus-shaped forms with both Gram-positive and Gram-negative reactions. Phosphate-solubilization indices ranged from 0.80 to 4.00, with PSB-L3 and PSB-L8 showing the highest solubilization capacity. These findings demonstrate that native PSB associated with P. indicus possess strong phosphate-solubilizing potential and represent promising candidates for the development of locally adapted biofertilizers aimed at enhancing soil phosphorus availability and supporting sustainable crop production.

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References

Ait-Ouakrim EH, Chakhchar A, El Modafar C, Douira A, Amir S, Ibnsouda-Koraichi S, Belkadi B, Filali-Maltouf A (2023). Valorization of Moroccan phosphate sludge through isolation and characterization of phosphate solubilizing bacteria and assessment of their growth promotion effect on Phaseolus vulgaris. Waste and Biomass Valorization 14(8):2673-2690. https://doi.org/10.1007/s12649-023-02054-2

Alori ET, Glick BR, Babalola OO (2017). Microbial Phosphorus solubilization and its potential for use in sustainable agriculture. Frontiers in Microbiology 8:971. https://doi.org/10.3389/fmicb.2017.00971

Amri M, Rjeibi MR, Gatrouni M, Mateus DMR, Asses N, Pinho HJO, Abbes C (2023). Isolation, identification, and characterization of phosphate-solubilizing bacteria from Tunisian soils. Microorganisms 11(3):783. https://doi.org/10.3390/microorganisms11030783

Arif A, Husna H, Tuheteru FD, Saleh I, Albasri A, Nurdin WR, Parwito P, Hadijah MH (2023). Effect of arbuscular mycorrhizal fungi inoculation on content and nutrient uptake of four-month-old Angsana (Pterocarpus indicus Willd.) plants in post-gold mining land in Bombana, Southeast Sulawesi. Journal of Tropical Mycorrhiza 2(1):37-44. https://doi.org/10.58222/jtm.v2i1.50

Awais M, Tariq M, Ali Q, Khan A, Ali A, Nasir I, Husnain T (2019). Isolation, characterization and association among phosphate solubilizing bacteria from sugarcane rhizosphere. Cytology and Genetics 53(1):86-95. https://doi.org/10.3103/S0095452719010031

Belkebla N, Bessai SA, Melo J, Caeiro MF, Cruz C, Nabti E-H (2022). Restoration of Triticum aestivum growth under salt stress by phosphate-solubilizing bacterium isolated from Southern Algeria. Agronomy 12(9)2050. https://doi.org/10.3390/agronomy12092050

Bhakta JN, Sarkar B, Brahma P (2022). Isolation and characterization of potential phosphate solubilizing bacteria from earthworm (Metaphire posthuma) for applying as biofertilizer. Organic Agriculture 12(3):431-444. https://doi.org/10.1007/s13165-022-00400-7

Bickel S, Or D (2020). Soil bacterial diversity mediated by microscale aqueous-phase processes across biomes. Nature Communications 11(1):116. https://doi.org/10.1038/s41467-019-13966-w

Damo JLC, Ramirez MDA, Agake S-I, Pedro M, Brown M, Sekimoto H, Yokoyama T, Sugihara S, Okazaki S, Ohkama-Ohtsu N (2022). Isolation and characterization of phosphate solubilizing bacteria from paddy field soils in Japan. Microbes and Environments 37(2):ME21085. https://doi.org/10.1264/jsme2.ME21085

Djuuna IAF, Prabawardani S, Massora M (2022). Population distribution of phosphate-solubilizing microorganisms in agricultural soil. Microbes and Environments 37(1):ME21041. https://doi.org/10.1264/jsme2.ME21041

Drenovsky R, Vo D, Graham K, Scow K (2004). Soil water content and organic carbon availability are major determinants of soil microbial community composition. Microbial Ecology 48(3):424-430. https://doi.org/10.1007/s00248-003-1063-2

Faad H, Tuheteru FD, Arif A (2018). Arbuscular Mycorrhizal fungi symbiosis and conservation of endangered tropical legume trees. In: Giri B, Prasad R, Varma A (Eds). Root Biology. Soil Biology 52 pp 465-486. Springer, Cham. https://doi.org/10.1007/978-3-319-75910-4_19

Fatima ZA, Mohamed M, Mohammed ElG, Laila N, Jamal I (2020). Isolation and characterization of phosphate solubilizing bacteria from phosphate solid sludge of the Moroccan phosphate mines. The Open Agriculture Journal 14:16-24.

Gardner CM, Robinson D, Blyth K, Cooper JD (2000). Soil water content. In: Soil and Environmental Analysis pp 13-76, CRC Press. https://doi.org/10.1201/9780203908600.ch1

Goswami D, Thakker JN, Dhandhukia PC, Tejada Moral M (2016). Portraying mechanics of plant growth promoting rhizobacteria (PGPR): A review. Cogent Food & Agriculture 2(1):1127500. https://doi.org/10.1080/23311932.2015.1127500

Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ (2003). Physiological and community responses of established grassland bacterial populations to water stress. Applied and Environmental Microbiology 69(12):6961-6968. https://doi.org/10.1128/AEM.69.12.6961-6968.2003

Gupta M, Kiran S, Gulati A, Singh B, Tewari R (2012). Isolation and identification of phosphate solubilizing bacteria able to enhance the growth and aloin-A biosynthesis of Aloe barbadensis Miller. Microbiological Research 167(6):358-363. https://doi.org/10.1016/j.micres.2012.02.004

Hariprasad P, Niranjana S (2009). Isolation and characterization of phosphate solubilizing rhizobacteria to improve plant health of tomato. Plant and Soil 316(1):13-24. https://doi.org/10.1007/s11104-008-9754-6

Hii YS, San CY, Lau SW, Danquah MK (2020). Isolation and characterisation of phosphate solubilizing microorganisms from peat. Biocatalysis and Agricultural Biotechnology 26:101643. https://doi.org/10.1016/j.bcab.2020.101643

Khamidov M, Ishchanov J, Hamidov A, Shermatov E, Gafurov Z (2023). Impact of soil surface temperature on changes in the groundwater level. Water 15(21):3865. https://doi.org/10.3390/w15213865

Khan M, Omoloso A (2003). Antibacterial activity of Pterocarpus indicus. Fitoterapia 74(6):603-605. https://doi.org/10.1016/S0367-326X(03)00149-7

Kour D, Rana KL, Sheikh I, Kumar V, Yadav AN, Dhaliwal HS, Saxena AK (2019). Alleviation of drought stress and plant growth promotion by Pseudomonas libanensis eu-lwna-33, a drought-adaptive phosphorus-solubilizing bacterium. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences 90(4):785-795. https://doi.org/10.1007/s40011-019-01151-4

Kumar A, Singh S, Mukherjee A, Rastogi RP, Verma JP (2021). Salt-tolerant plant growth-promoting Bacillus pumilus strain JPVS11 to enhance plant growth attributes of rice and improve soil health under salinity stress. Microbiological Research 242:126616. https://doi.org/10.1016/j.micres.2020.126616

Li KS, Zeghbroeck JV, Liu Q, Zhang S (2021). Isolating and characterizing phosphorus solubilizing bacteria from rhizospheres of native plants grown in calcareous soils. Frontiers in Environmental Science 9:802563. https://doi.org/10.3389/fenvs.2021.802563

Lopez E, Vionnet C, Ferrer-Cid P, Barcelo-Ordinas JM, Garcia-Vidal J, Contini G, Prodolliet J, Maiztegui J (2022). A low-power IoT device for measuring water table levels and soil moisture to ease increased crop yields. Sensors 22(18):6840. https://doi.org/10.3390/s22186840

Nyongesa BO, Aloo BN, Wer BAi (2025). Phosphate-solubilizing rhizobacteria from wild sorghum enhance growth of cultivated sorghum under rock phosphate fertilization. Discover Sustainability 6(1):510. https://doi.org/10.1007/s43621-025-01175-z

Pande A, Pandey P, Mehra S, Singh M, Kaushik S (2017). Phenotypic and genotypic characterization of phosphate solubilizing bacteria and their efficiency on the growth of maize. Journal of Genetic Engineering and Biotechnology 15(2):379-391. https://doi.org/10.1016/j.jgeb.2017.06.005

Pandey D, Putatunda C (2018). Isolation and characterization of phosphate solubilizing bacteria from the rhizosphere of potato plant. International Journal of Current Microbiology and Applied Sciences 7(1):967-975. https://doi.org/10.20546/ijcmas.2018.701.116

Paul D, Sinha SN (2017). Isolation and characterization of phosphate solubilizing bacterium Pseudomonas aeruginosa KUPSB12 with antibacterial potential from river Ganga, India. Annals of Agrarian Science 15(1):130-136. https://doi.org/10.1016/j.aasci.2016.10.001

Qarni A, Billah M, Hussain K, Shah SH, Ahmed W, Alam S, Sheikh A A, Jafri L, Munir A, Malik KM, Khan N (2021). Isolation and characterization of phosphate solubilizing microbes from rock phosphate mines and their potential effect for sustainable agriculture. Sustainability 13(4):2151. https://doi.org/10.3390/su13042151

Qingwei Z, Lushi T, Yu Z, Yu S, Wanting W, Jiangchuan W, Xiaolei D, Xuejiao H, Bilal M (2023). Isolation and characterization of phosphate-solubilizing bacteria from rhizosphere of poplar on road verge and their antagonistic potential against various phytopathogens. BMC Microbiology 23(1):221. https://doi.org/10.1186/s12866-023-02953-3

Qurban Ali P (2012). Isolation and characterization of phosphate-solubilizing bacteria from aerobic rice. African Journal of Biotechnology 11(11):2711-2719. https://doi.org/10.5897/AJB10.2218

Ragasa CY, De Luna RD, Hofilena JG (2005). Antimicrobial terpenoids from Pterocarpus indicus. Natural Product Research 19(4):305-309. https://doi.org/10.1080/14786410410001704822

Rahayu YS, Yuliani, Trimulyono G (2019). Isolation and identification of hydrocarbon degradation bacteria and phosphate solubilizing bacteria in oil contaminatedsoil in Bojonegoro, East Java, Indonesia. Indonesian Journal of Science & Technology 4(1):134-147. https://doi.org/10.17509/ijost.v4i1.14923

Sarikhani MR, Khoshru B, Greiner R (2019). Isolation and identification of temperature tolerant phosphate solubilizing bacteria as a potential microbial fertilizer. World Journal of Microbiology and Biotechnology 35(8):126. https://doi.org/10.1007/s11274-019-2702-1

Sharma SB, Sayyed RZ, Trivedi MH, Gobi TA (2013). Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils. SpringerPlus 2(1):587. https://doi.org/10.1186/2193-1801-2-587

Sheng Y, Li G, Dong H, Liu Y, Ma L, Yang M, Liu Y, Liu J, Deng S, Zhang D (2021). Distinct assembly processes shape bacterial communities along unsaturated, groundwater fluctuated, and saturated zones. Science of the Total Environment 761:143303. https://doi.org/10.1016/j.scitotenv.2020.143303

Teng Z, Chen Z, Zhang Q, Yao Y, Song M, Li M (2019). Isolation and characterization of phosphate solubilizing bacteria from rhizosphere soils of the Yeyahu Wetland in Beijing, China. Environmental Science and Pollution Research 26(33):33976-33987. https://doi.org/10.1007/s11356-018-2955-5

Timofeeva A, Galyamova M, Sedykh S (2022). Prospects for using phosphate-solubilizing microorganisms as natural fertilizers in agriculture. Plants 11(16):2119. https://doi.org/10.3390/plants11162119

Tomer S, Suyal DC, Shukla A, Rajwar J, Yadav A, Shouche Y, Goel R (2017). Isolation and characterization of phosphate solubilizing bacteria from Western Indian Himalayan soils. 3 Biotech 7(2):95. https://doi.org/10.1007/s13205-017-0738-1

Ughamba KT, Ndukwe JK, Lidbury IDEA, Nnaji ND, Eze CN, Aduba CC, Groenhof S, Chukwu KO, Anyanwu CU, Nwaiwu O, Anumudu CK (2025). Trends in the application of phosphate-solubilizing microbes as biofertilizers: implications for soil improvement. Soil Systems 9(1):6. https://doi.org/10.3390/soilsystems9010006

Wan W, Qin Y, Wu H, Zuo W, He H, Tan J, Wang, He D (2020). Isolation and characterization of phosphorus solubilizing bacteria with multiple phosphorus sources utilizing capability and their potential for lead immobilization in soil. Frontiers in Microbiology 11:752. https://doi.org/10.3389/fmicb.2020.00752

Zhang T, Hu F, Ma L (2019). Phosphate-solubilizing bacteria from safflower rhizosphere and their effect on seedling growth. Open Life Sciences 14:246-254. https://doi.org/10.1515/biol-2019-0028

Zhang YK, Schilling K (2006). Effects of land cover on water table, soil moisture, evapotranspiration, and groundwater recharge: A field observation and analysis. Journal of Hydrology 319(1-4):328-338. https://doi.org/10.1016/j.jhydrol.2005.06.044

Zheng BX, Ibrahim M, Zhang DP, Bi QF, Li HZ, Zhou GW, Ding K, Penuelas J, Zhu YG, Yang XR (2018). Identification and characterization of inorganic-phosphate-solubilizing bacteria from agricultural fields with a rapid isolation method. AMB Express 8(1):47. https://doi.org/10.1186/s13568-018-0575-6

Zhou Q, Sun Z, Liu X, Wei X, Peng Z, Yue C, Luo Y (2019). Temporal soil moisture variations in different vegetation cover types in karst areas of southwest China: A plot scale case study. Water 11(7):1423. https://doi.org/10.3390/w11071423

Zolfaghari R, Rezaei K, Fayyaz P, Naghiha R, Namvar Z (2020). The effect of indigenous phosphate-solubilizing bacteria on Quercus brantii seedlings under water stress. Journal of Sustainable Forestry 40(7):733-747. https://doi.org/10.1080/10549811.2020.1817757

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Published

2025-12-14

How to Cite

OHIWAL, M., ZALIZAR, L., HUSEN, S., & TRIWANTO, J. (2025). Isolation, characterization, and evaluation of the phosphate-solubilizing capacity of rhizospheric bacteria associated with Pterocarpus indicus. Notulae Scientia Biologicae, 17(4), 12758. https://doi.org/10.55779/nsb17412758

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DOI: 10.55779/nsb17412758

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